Tracing the minimum-energy path on the free-energy surface.
نویسندگان
چکیده
The free-energy profile of a reaction can be estimated in a molecular-dynamics approach by imposing a mechanical constraint along a reaction coordinate (RC). Many recent studies have shown that the temperature can greatly influence the path followed by the reactants. Here, we propose a practical way to construct the minimum-energy path directly on the free-energy surface at a given temperature. First, we follow the blue-moon ensemble method to derive the expression of the free-energy gradient for a given RC. These derivatives are then used to find the actual minimum-energy reaction path at finite temperature, in a way similar to the intrinsic reaction path of Fukui on the potential-energy surface. [K. Fukui, J. Phys. Chem. 74, 4161 (1970)]. Once the path is known, one can calculate the free-energy profile using thermodynamic integration. We also show that the mass-metric correction cancels for many types of constraints, making the procedure easy to use. Finally, the minimum-free-energy path at 300 K for the addition of CCl2 to ethylene is compared with a path based on a simple one-dimensional reaction coordinate. A comparison is also given with the reaction path at 0 K.
منابع مشابه
A genetic algorithm-based approach for numerical solution of droplet status after Coulomb fission using the energy
As a droplet moves, due to evaporation at the surface, the droplet size is gradually reduced. Due to decreasing the size of the droplets moving in the spray core, the surface charges become closer and the repulsive force between the charges increases. When the Coulombic force overcomes the surface tension force (Rayleigh instability) the droplet breaks into smaller droplets (Coulomb fission). T...
متن کاملQM/MM Minimum Free Energy Path: Methodology and Application to Triosephosphate Isomerase.
Structural and energetic changes are two important characteristic properties of a chemical reaction process. In the condensed phase, studying these two properties is very challenging because of the great computational cost associated with the quantum mechanical calculations and phase space sampling. Although the combined quantum mechanics/molecular mechanics (QM/MM) approach significantly reduc...
متن کاملApplication of SCB Test and Surface Free Energy Method in Evaluating Crack Resistance of SBS Modified Asphalt Mixes
Cohesion properties of the binder matrix within asphalt mixes and adhesion characteristics of the asphalt binder and aggregate particles are the two major mechanisms resisting against cracking in asphalt mixes. This study is focused on estimating crack resistance of asphalt mixes at intermediate temperatures through evaluation of cohesion and adhesion properties of binder-aggregate systems usin...
متن کاملNovel Poly (glycerol-adipate) Polymers Used for Nanoparticle Making: A Study of Surface Free Energy
Nanoparticles made of biodegradable polymers has become the best approach for nanoparticle making due to their compatibility with the human body. New glycerol adipate polymers with hydroxyl group substituted with different percent of acyl group, sited as figures within the abbreviated name in the text, and triptophan were synthesized and proposed to be used in the preparction of dexamethason ph...
متن کاملMulti-Component-Multiphase Flash Calculations for Systems Containing Gas Hydrates by Direct Minimization of Gibbs Free Energy
The Michelsen stability and multiphase flash calculation by direct minimization of Gibbs free energy of the system at constant temperature and pressure, was used for systems containing gas hydrates. The solid hydrate phase was treated as a solid solution. The fugacities of all components of the hydrate phase were calculated as a function of compositions by the rearranged model of van der Wa...
متن کاملذخیره در منابع من
با ذخیره ی این منبع در منابع من، دسترسی به آن را برای استفاده های بعدی آسان تر کنید
عنوان ژورنال:
- The Journal of chemical physics
دوره 123 8 شماره
صفحات -
تاریخ انتشار 2005